The example data set | Initializating and fitting the GLM-PCA model | Session info
Package: fastglmpca 0.1-108
Eric Weine
fastglmpca: Fast Algorithms for Generalized Principal Component Analysis
Implements fast, scalable optimization algorithms for fitting generalized principal components analysis (GLM-PCA) models, as described in "A Generalization of Principal Components Analysis to the Exponential Family" Collins M, Dasgupta S, Schapire RE (2002, ISBN:9780262271738), and subsequently "Feature Selection and Dimension Reduction for Single-Cell RNA-Seq Based on a Multinomial Model" Townes FW, Hicks SC, Aryee MJ, Irizarry RA (2019) <doi:10.1186/s13059-019-1861-6>.
Authors:
fastglmpca_0.1-108.tar.gz
fastglmpca_0.1-108.zip(r-4.7)fastglmpca_0.1-108.zip(r-4.6)fastglmpca_0.1-108.zip(r-4.5)
fastglmpca_0.1-108.tgz(r-4.6-x86_64)fastglmpca_0.1-108.tgz(r-4.6-arm64)fastglmpca_0.1-108.tgz(r-4.5-x86_64)fastglmpca_0.1-108.tgz(r-4.5-arm64)
fastglmpca_0.1-108.tar.gz(r-4.7-arm64)fastglmpca_0.1-108.tar.gz(r-4.7-x86_64)fastglmpca_0.1-108.tar.gz(r-4.6-arm64)fastglmpca_0.1-108.tar.gz(r-4.6-x86_64)
fastglmpca_0.1-108.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fastglmpca/json (API)
| # Install 'fastglmpca' in R: |
| install.packages('fastglmpca', repos = c('https://stephenslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephenslab/fastglmpca/issues
Datasets:
- pbmc_facs - Mixture of 10 FACS-purified PBMC Single-Cell RNA-seq data
Last updated from:4d7c3d1455. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 198 | ||
| linux-devel-x86_64 | OK | 264 | ||
| source / vignettes | OK | 271 | ||
| linux-release-arm64 | OK | 218 | ||
| linux-release-x86_64 | OK | 229 | ||
| macos-release-arm64 | OK | 202 | ||
| macos-release-x86_64 | OK | 430 | ||
| macos-oldrel-arm64 | OK | 158 | ||
| macos-oldrel-x86_64 | OK | 535 | ||
| windows-devel | OK | 231 | ||
| windows-release | OK | 232 | ||
| windows-oldrel | OK | 340 | ||
| wasm-release | OK | 132 |
Exports:fit_glmpca_poisfit_glmpca_pois_control_defaultgenerate_glmpca_data_poisinit_glmpca_poisset_fastglmpca_threads
Dependencies:daaremdistrlatticeMASSMatrixRcppRcppArmadilloRcppParallelsfsmiscstartupmsg
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fit Poisson GLM-PCA Model to Count Data | fit_glmpca_pois fit_glmpca_pois_control_default init_glmpca_pois |
| Get Fitted Values for GLM-PCA Model Fit | fitted.glmpca_pois_fit |
| Generate Data from a GLM-PCA Model | generate_glmpca_data_pois |
| Mixture of 10 FACS-purified PBMC Single-Cell RNA-seq data | pbmc_facs |
| Set up Multithreading for fastglmpca | set_fastglmpca_threads |
| Summarize GLM-PCA Model Fit | print.summary.glmpca_pois_fit summary.glmpca_pois_fit |
