Fine-mapping with summary statisticsUpdated 10 days ago

Yuxin Zou and Gao Wang

Rendered from finemapping_summary_statistics.Rmd in susieR 0.16.2.
News and UpdatesUpdated 10 days ago

Peter Carbonetto

Rendered from announcements.Rmd in susieR 0.16.2.
Modeling and Accounting for LD Reference Mismatch in Summary Statistics Fine-mappingUpdated 21 days ago

Gao Wang

Rendered from rss_mismatch.Rmd in susieR 0.16.2.
Post-hoc credible-set filtering without an LD referenceUpdated 21 days ago

Alex McCreight

Rendered from susie_attainable_coverage.Rmd in susieR 0.16.2.
Compare susie_rss variantsUpdated 1 months ago

Peter Carbonetto

Rendered from susie_rss.Rmd in susieR 0.16.2.
Diagnostic for fine-mapping with summary statisticsUpdated 1 months ago

Yuxin Zou

Rendered from susierss_diagnostic.Rmd in susieR 0.16.2.
Fine-mapping exampleUpdated 1 months ago

Gao Wang

Rendered from finemapping.Rmd in susieR 0.16.2.
Accounting for uncertainty in residual variances for small sample studiesUpdated 1 months ago

William R.P. Denault

Rendered from small_sample.Rmd in susieR 0.16.2.
Fine-mapping with SuSiE-ash and SuSiE-infUpdated 3 months ago

Alex McCreight

Rendered from susie_unmappable_effects.Rmd in susieR 0.16.2.
Introduction to mr.mashUpdated 5 months ago

Peter Carbonetto & Fabio Morgante

Rendered from mr_mash_intro.Rmd in mr.mashr 0.3.44.
Refine SuSiE modelUpdated 7 months ago

Yuxin Zou

Rendered from susie_refine.Rmd in susieR 0.16.2.
SuSiE with L0Learn initialization exampleUpdated 7 months ago

Kaiqian Zhang

Rendered from l0_initialization.Rmd in susieR 0.16.2.
Evaluation of sparse version of SuSiEUpdated 7 months ago

Kaiqian Zhang

Rendered from sparse_susie_eval.Rmd in susieR 0.16.2.
Trend filteringUpdated 7 months ago

Matthew Stephens

Rendered from trend_filtering.Rmd in susieR 0.16.2.
Extending ebnm with custom ebnm-style functionsUpdated 9 months ago

Peter Carbonetto

Rendered from extending_ebnm.Rmd in ebnm 1.1-42.
Introduction to the empirical Bayes normal means model via shrinkage estimationUpdated 9 months ago

Peter Carbonetto

Rendered from shrink_intro.Rmd in ebnm 1.1-42.
ASH-based wavelet shrinkage for heteroskedastic modelsUpdated 2 years ago

Peter Carbonetto

Rendered from smashr.Rmd in smashr 1.3-12.
An analysis of weighted on-base averages using the ebnm packageUpdated 2 years ago

Peter Carbonetto

Rendered from baseball.Rmd in ebnm 1.1-42.
Analysis of single-cell RNA-seq data using fastglmpcaUpdated 2 years ago

Eric Weine and Peter Carbonetto

Rendered from intro_fastglmpca.Rmd in fastglmpca 0.1-108.
Illustration of mixsqp applied to a small data set, and a large oneUpdated 2 years ago

Youngseok Kim, Peter Carbonetto and Matthew Stephens

Rendered from mixsqp-intro.Rmd in mixsqp 0.3-54.
Empirical Bayes matrix factorization for data driven priorUpdated 3 years ago

Gao Wang

Rendered from flash_mash.Rmd in mashr 0.2.81.
Introduction to mashrUpdated 3 years ago

Matthew Stephens

Rendered from intro_mash.Rmd in mashr 0.2.81.
Accounting for correlations among measurementsUpdated 3 years ago

Matthew Stephens

Rendered from intro_correlations.Rmd in mashr 0.2.81.
eQTL analysis outlineUpdated 3 years ago

Matthew Stephens

Rendered from eQTL_outline.Rmd in mashr 0.2.81.
Sample from mash posteriorsUpdated 4 years ago

Yuxin Zou

Rendered from mash_sampling.Rmd in mashr 0.2.81.
mashr with common baselineUpdated 5 years ago

Yuxin Zou

Rendered from intro_mashcommonbaseline.Rmd in mashr 0.2.81.
A minimal exampleUpdated 5 years ago

Matthew Stephens

Rendered from mwe.Rmd in susieR 0.16.2.
mashr with common baseline at meanUpdated 6 years ago

Yuxin Zou

Rendered from intro_mashbaselinemean.Rmd in mashr 0.2.81.
Introduction to mash: data-driven covariancesUpdated 8 years ago

Matthew Stephens

Rendered from intro_mash_dd.Rmd in mashr 0.2.81.
Simulation with non-canonical matricesUpdated 8 years ago

Matthew Stephens

Rendered from simulate_noncanon.Rmd in mashr 0.2.81.
An illustration of EbayesThresh with heterogeneous varianceUpdated 9 years ago

Peter Carbonetto

Rendered from ebayesthresh.Rmd in EbayesThresh 1.4-13.