Package: EbayesThresh 1.4-13

Peter Carbonetto

EbayesThresh: Empirical Bayes Thresholding and Related Methods

Empirical Bayes thresholding using the methods developed by I. M. Johnstone and B. W. Silverman. The basic problem is to estimate a mean vector given a vector of observations of the mean vector plus white noise, taking advantage of possible sparsity in the mean vector. Within a Bayesian formulation, the elements of the mean vector are modelled as having, independently, a distribution that is a mixture of an atom of probability at zero and a suitable heavy-tailed distribution. The mixing parameter can be estimated by a marginal maximum likelihood approach. This leads to an adaptive thresholding approach on the original data. Extensions of the basic method, in particular to wavelet thresholding, are also implemented within the package.

Authors:Bernard W. Silverman [aut], Ludger Evers [aut], Kan Xu [aut], Peter Carbonetto [aut, cre], Matthew Stephens [aut]

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EbayesThresh/json (API)

# Install 'EbayesThresh' in R:
install.packages('EbayesThresh', repos = c('https://stephenslab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stephenslab/ebayesthresh/issues

On CRAN:

8.87 score 4 stars 14 packages 55 scripts 80k downloads 1 mentions 24 exports 2 dependencies

Last updated 7 years agofrom:924b907ab3. Checks:1 OK, 6 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 23 2025
R-4.5-winWARNINGJan 23 2025
R-4.5-linuxWARNINGJan 23 2025
R-4.4-winWARNINGJan 23 2025
R-4.4-macWARNINGJan 23 2025
R-4.3-winWARNINGJan 23 2025
R-4.3-macWARNINGJan 23 2025

Exports:beta.cauchybeta.laplacecauchy.medzerocauchy.threshzeroebayesthreshebayesthresh.waveletisotonelaplace.threshzeronegloglik.laplacepostmeanpostmean.cauchypostmean.laplacepostmedpostmed.cauchypostmed.laplacetfromwtfromxthreshldvecbinsolvwandafromxwfromtwfromxwmonfromxzetafromx

Dependencies:MASSwavethresh

An illustration of EbayesThresh with heterogeneous variance

Rendered fromebayesthresh.Rmdusingknitr::rmarkdownon Jan 23 2025.

Last update: 2017-06-07
Started: 2017-06-03