Package: EbayesThresh 1.4-13
EbayesThresh: Empirical Bayes Thresholding and Related Methods
Empirical Bayes thresholding using the methods developed by I. M. Johnstone and B. W. Silverman. The basic problem is to estimate a mean vector given a vector of observations of the mean vector plus white noise, taking advantage of possible sparsity in the mean vector. Within a Bayesian formulation, the elements of the mean vector are modelled as having, independently, a distribution that is a mixture of an atom of probability at zero and a suitable heavy-tailed distribution. The mixing parameter can be estimated by a marginal maximum likelihood approach. This leads to an adaptive thresholding approach on the original data. Extensions of the basic method, in particular to wavelet thresholding, are also implemented within the package.
Authors:
EbayesThresh_1.4-13.tar.gz
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EbayesThresh.pdf |EbayesThresh.html✨
EbayesThresh/json (API)
# Install 'EbayesThresh' in R: |
install.packages('EbayesThresh', repos = c('https://stephenslab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/stephenslab/ebayesthresh/issues
Last updated 7 years agofrom:924b907ab3. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
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Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | WARNING | Oct 25 2024 |
R-4.5-linux | WARNING | Oct 25 2024 |
R-4.4-win | WARNING | Oct 25 2024 |
R-4.4-mac | WARNING | Oct 25 2024 |
R-4.3-win | WARNING | Oct 25 2024 |
R-4.3-mac | WARNING | Oct 25 2024 |
Exports:beta.cauchybeta.laplacecauchy.medzerocauchy.threshzeroebayesthreshebayesthresh.waveletisotonelaplace.threshzeronegloglik.laplacepostmeanpostmean.cauchypostmean.laplacepostmedpostmed.cauchypostmed.laplacetfromwtfromxthreshldvecbinsolvwandafromxwfromtwfromxwmonfromxzetafromx
Dependencies:MASSwavethresh
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Function beta for the quasi-Cauchy prior | beta.cauchy |
Function beta for the Laplace prior | beta.laplace |
Empirical Bayes thresholding on a sequence | ebayesthresh |
Empirical Bayes thresholding on the levels of a wavelet transform. | ebayesthresh.wavelet ebayesthresh.wavelet.dwt ebayesthresh.wavelet.splus ebayesthresh.wavelet.wd |
Posterior mean estimator | postmean postmean.cauchy postmean.laplace |
Posterior median estimator | cauchy.medzero postmed postmed.cauchy postmed.laplace |
Find threshold from mixing weight | cauchy.threshzero laplace.threshzero tfromw |
Find thresholds from data | tfromx |
Threshold data with hard or soft thresholding | threshld |
Find weight and inverse scale parameter from data if Laplace prior is used. | negloglik.laplace wandafromx |
Mixing weight from posterior median threshold | wfromt |
Find Empirical Bayes weight from data | wfromx |
Find monotone Empirical Bayes weights from data. | wmonfromx |
Estimation of a parameter in the prior weight sequence in the EbayesThresh paradigm. | zetafromx |